I recently discovered that I could organize my custom GPTs into projects, which I was excited about because I wanted to use projects as folders for organization. However, after moving them into projects, I realized something alarming:
• All my past chats with my custom GPTs were converted into standard GPT-4 chats.
• The chats no longer display my custom GPT’s name or icon, and they no longer function the same way.
• Even after removing the GPTs from projects, the conversations remained changed, I can no longer interact with those chats as I originally could.
Has anyone else experienced this? And is there any way to restore my chats with my custom GPT? I appreciate any help or clarification on this. 
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I have literally just now experienced the same problem you encountered. I tried to organize all of my chats, but the ones that were custom GPTs (e.g. Wolfram ) got downgraded to the regular GPT4o . I experienced all of the three bullet points that you wrote. The only “solution” I came up with (which is not satisfactory) is once you remove the GPTs from the project, use “@” when writing a prompt to force enable your custom GTPs each time But still… I think it’s not the same as ‘having the whole chat BE’ that custom GPT, idk.
Thats a good temporary fix, i think i might get a extension that lets you download entire chats as a pdf and just give that back to the gpt, it wont be the same but better than nothing